8 items, newest first.
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Rosen Y, Roohani Y, Agrawal A, Samotorcan L, Tabula Sapiens Consortium, Quake SR, Quake SR, Leskovec J. · bioRxiv · 2023-11-29
Universal Cell Embeddings (UCE), cross-species zero-shot cell embedding (Leskovec/Quake).
Wen H, Tang W, Dai X, Ding J, Jin W, Xie Y, Tang J. · bioRxiv · 2023-10-05
CellPLM: cell language model beyond single cells (spatial context).
Bunne C, Stark SG, Gut G, Del Castillo JS, Levesque M, Lehmann KV, Pelkmans L, Krause A, Rätsch G. · Nature methods · 2023-09-28
CellOT: neural optimal transport for single-cell perturbation responses.
Levine D et al. · bioRxiv · 2023-09-14
Cell2Sentence: cells as text for LLMs.
Roohani Y, Huang K, Leskovec J. · Nature biotechnology · 2023-08-17
GEARS: knowledge-graph GNN predicting multigene perturbation outcomes.
Wang Z, Wang Y, Chang M, Wang Y, Liu P, Wu J, Wang G, Tang X, Hui X, Liu P, Guo X, Xing B, Wang Y, Han Z, Ma W. · Neuro-oncology · 2023-07-01
Cellular origins and drivers of brain metastasis by scRNA-seq.
Theodoris CV, Xiao L, Chopra A, Chaffin MD, Al Sayed ZR, Hill MC, Mantineo H, Brydon EM, Zeng Z, Liu XS, Ellinor PT. · Nature · 2023-05-31
Geneformer: context-aware transformer enabling in silico deletion/network predictions.
Lotfollahi M et al. · Molecular systems biology · 2023-05-08
CPA: compositional perturbation autoencoder for drug/dose/combination responses.