Spatial transcriptomics
Also known as: spatial omics
Gene-expression profiling with tissue coordinates. Library studies use it to describe multi-layered organisation, niches and core-to-edge cell states of glioblastoma; GBmap adds high-resolution spatial transcriptomics to its single-cell atlas. VC0060 VC0061 VC0062 VC0092 · preprint
Review pending Version 0.1.0 · status: draft · last expert review: not yet reviewed
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Appears in library items (11)
Items whose title, tags or one-line summary match this entity (derived from the data), plus the items cited as evidence for the description.
- VC0088 Single-cell and spatial transcriptomes reveal oligodendrocyte remodeling fatty acid metabolism microenvironment of lung cancer brain metastases. — Yang Y, Gao Y, Qi Z, Li S, Wang Z, Li D, Chen L, Zhou C, Feng M, Chen X, Hao B, Wu X, Li L, Cao Y., Journal of translational medicine, 2026
- VC0047 · preprint Cellfm-datasets: A Unified Data Infrastructure for Single-Cell and Spatial Transcriptomics Foundation Model Pretraining — Zhang L, Pang J, Yan J, Tang W, Deng Y, He Y., bioRxiv, 2026
- VC0025 Novae: a graph-based foundation model for spatial transcriptomics data. — Blampey Q, Benkirane H, Bercovici N, Mulder K, Gessain G, Ginhoux F, André F, Cournède PH., Nature methods, 2025
- VC0028 STPath: a generative foundation model for integrating spatial transcriptomics and whole-slide images. — Huang T, Liu T, Babadi M, Ying R, Jin W., NPJ digital medicine, 2025
- VC0060 Charting the single-cell and spatial landscape of IDH-wild-type glioblastoma with GBmap. — Ruiz-Moreno C et al., Neuro-oncology, 2025
- VC0026 A visual-omics foundation model to bridge histopathology with spatial transcriptomics. — Chen W et al., Nature methods, 2025
- VC0092 · preprint Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions — Khan SM et al., bioRxiv, 2025
- VC0027 · preprint scGPT-spatial: Continual Pretraining of Single-Cell Foundation Model for Spatial Transcriptomics — Wang C, Cui H, Zhang A, Xie R, Goodarzi H, Wang B., bioRxiv, 2025
- VC0061 Integrative spatial analysis reveals a multi-layered organization of glioblastoma. — Greenwald AC et al., Cell, 2024
- VC0086 The spatial transcriptomic landscape of non-small cell lung cancer brain metastasis. — Zhang Q, Abdo R, Iosef C, Kaneko T, Cecchini M, Han VK, Li SS., Nature communications, 2022
- VC0062 Spatially resolved multi-omics deciphers bidirectional tumor-host interdependence in glioblastoma. — Ravi VM et al., Cancer cell, 2022
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